Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03156.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 211
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.31


Found at i:50 original size:18 final size:19

Alignment explanation


    Indices: 5--50  Score: 60
    Period size: 18  Copynumber: 2.5  Consensus size: 19

          1 AAAC

                            *  
          5 AAATTT-CCCTAACTCTCT
          1 AAATTTCCCCTAACTCCCT

             *                 
         23 ACATTTCCCCTAA-TCCCT
          1 AAATTTCCCCTAACTCCCT

                      
         41 AAATTTCCCC
          1 AAATTTCCCC

         51 CAAAATCCCT


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  18   18  0.75
  19    6  0.25

ACGTcount: A:0.26, C:0.39, G:0.00, T:0.35


Consensus pattern (19 bp):   
AAATTTCCCCTAACTCCCT

Done.