Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1065
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32


Found at i:54 original size:1 final size:1

Alignment explanation


    Indices: 16--46  Score: 62
    Period size: 1  Copynumber: 31.0  Consensus size: 1

          6 CGCTAATAAC

                                           
         16 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         47 CTGAAAAAGG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   30  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:113 original size:10 final size:10

Alignment explanation


    Indices: 98--126  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

         88 AAGAAAACCC

                      
         98 TTCACTGTTA
          1 TTCACTGTTA

                      
        108 TTCACTGTTA
          1 TTCACTGTTA

                     
        118 TTCACTGTT
          1 TTCACTGTT

        127 TTCGCCAATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.17, C:0.21, G:0.10, T:0.52


Consensus pattern (10 bp):   
TTCACTGTTA
Done.