Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03167.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 433

Length: 722
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:148 original size:24 final size:24

Alignment explanation


    Indices: 116--163  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        106 ATTGTTCAAC

                                    
        116 GGAAAGAGAATCAATCAATGCCTT
          1 GGAAAGAGAATCAATCAATGCCTT

                                    
        140 GGAAAGAGAATCAATCAATGCCTT
          1 GGAAAGAGAATCAATCAATGCCTT

        164 ACTTTGCTTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21


Consensus pattern (24 bp):   
GGAAAGAGAATCAATCAATGCCTT
Done.