Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03170.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1422
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1398 original size:20 final size:20

Alignment explanation


    Indices: 1375--1415  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1365 GCCCCACGAC

                                
       1375 CATGTCCCAAGCCACACGGG
          1 CATGTCCCAAGCCACACGGG

                     *          
       1395 CATGTCCCAGGCCACACGGG
          1 CATGTCCCAAGCCACACGGG

             
       1415 C
          1 C

       1416 GTGTGCC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.22, C:0.41, G:0.27, T:0.10


Consensus pattern (20 bp):   
CATGTCCCAAGCCACACGGG
Done.