Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03178.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3523
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:58 original size:5 final size:5

Alignment explanation


    Indices: 48--78  Score: 62
    Period size: 5  Copynumber: 6.2  Consensus size: 5

         38 GAATTCGTCC

                                                 
         48 CTTCT CTTCT CTTCT CTTCT CTTCT CTTCT C
          1 CTTCT CTTCT CTTCT CTTCT CTTCT CTTCT C

         79 CTTTTGCTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58


Consensus pattern (5 bp):   
CTTCT

Done.