Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01234.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4016
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28


Found at i:597 original size:2 final size:2

Alignment explanation


    Indices: 584--619  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

        574 TTTCGAGCAA

                      *                                          
        584 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

        620 AATCTGTTAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
TC

Found at i:2317 original size:3 final size:3

Alignment explanation


    Indices: 2309--2362  Score: 63
    Period size: 3  Copynumber: 18.0  Consensus size: 3

       2299 GATGTATCCA

                             *       *      *    *                         
       2309 ATG ATG ATG ATG AGG ATG AGG ATG GTG ACG ATG ATG ATG ATG ATG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

            *      
       2357 GTG ATG
          1 ATG ATG

       2363 CAGCAAGTGA


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   3   41  1.00

ACGTcount: A:0.30, C:0.02, G:0.41, T:0.28


Consensus pattern (3 bp):   
ATG

Done.