Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03199.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28


Found at i:1471 original size:17 final size:17

Alignment explanation


    Indices: 1425--1475  Score: 59
    Period size: 18  Copynumber: 2.9  Consensus size: 17

       1415 CTCTAAACCC

                             
       1425 AAAATAAAAACCCTAAT
          1 AAAATAAAAACCCTAAT

                    **         
       1442 AAAA-ACTCTAACCCTAAT
          1 AAAATA--AAAACCCTAAT

                            
       1460 AAAATAAAAACCCTAA
          1 AAAATAAAAACCCTAA

       1476 CCCTGGAAGA


Statistics
Matches: 27,  Mismatches: 4, Indels: 6
        0.73            0.11        0.16

Matches are distributed among these distances:
  16    1  0.04
  17   12  0.44
  18   13  0.48
  19    1  0.04

ACGTcount: A:0.61, C:0.22, G:0.00, T:0.18


Consensus pattern (17 bp):   
AAAATAAAAACCCTAAT
Done.