Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03204.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32


Found at i:25 original size:4 final size:4

Alignment explanation


    Indices: 16--41  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

          6 GAGTGACGAA

                                            
         16 CCTG CCTG CCTG CCTG CCTG CCTG CC
          1 CCTG CCTG CCTG CCTG CCTG CCTG CC

         42 ACGCTCCCTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.00, C:0.54, G:0.23, T:0.23


Consensus pattern (4 bp):   
CCTG

Done.