Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03213.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 454

Length: 758
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36


Found at i:63 original size:22 final size:22

Alignment explanation


    Indices: 38--85  Score: 78
    Period size: 22  Copynumber: 2.2  Consensus size: 22

         28 GATTTATTCC

                *                 
         38 TGTCTGCCTGTTGGCACGCCTT
          1 TGTCGGCCTGTTGGCACGCCTT

                   *              
         60 TGTCGGCTTGTTGGCACGCCTT
          1 TGTCGGCCTGTTGGCACGCCTT

                
         82 TGTC
          1 TGTC

         86 CCTTTGCTTC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.04, C:0.29, G:0.29, T:0.38


Consensus pattern (22 bp):   
TGTCGGCCTGTTGGCACGCCTT
Done.