Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03215.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 309

Length: 515
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29


Found at i:439 original size:3 final size:3

Alignment explanation


    Indices: 433--473  Score: 64
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        423 ATCATATATT

                                *   *                             
        433 ATA ATA ATA ATA ATA GTA GTA ATA ATA ATA ATA ATA ATA AT
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT

        474 TCAACATTTC


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34


Consensus pattern (3 bp):   
ATA

Done.