Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03217.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2804
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26


Found at i:44 original size:21 final size:21

Alignment explanation


    Indices: 12--53  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

          2 TCGTTTCAGT

                                  
         12 GGAAGAAGAGAA-AAAGGAGAA
          1 GGAAGAAGAGAATAAA-GAGAA

                                  
         33 GGAA-AAGAAGAATAAAGAGAA
          1 GGAAGAAG-AGAATAAAGAGAA

         54 ATGGAGATGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  20    3  0.16
  21   13  0.68
  22    3  0.16

ACGTcount: A:0.64, C:0.00, G:0.33, T:0.02


Consensus pattern (21 bp):   
GGAAGAAGAGAATAAAGAGAA

Found at i:2713 original size:58 final size:58

Alignment explanation


    Indices: 2618--2730  Score: 172
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       2608 CTTGGCTTCA

                                **     *    *       *                 
       2618 ATAGATACCTTGTTCCTTTCTGAAAGGTTAGCCTTGACAAGTGAAATGGTAAGGCTGG
          1 ATAGATACCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGCTGG

                  *                                                
       2676 ATAGATCCCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGC
          1 ATAGATACCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGC

       2731 AGAAATTGTT


Statistics
Matches: 49,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  58   49  1.00

ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Consensus pattern (58 bp):   
ATAGATACCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGCTGG
Done.