Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03217.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2582
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:2491 original size:58 final size:58

Alignment explanation


    Indices: 2396--2508  Score: 172
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       2386 CTTGGCTTCA

                                **     *    *       *                 
       2396 ATAGATACCTTGTTCCTTTCTGAAAGGTTAGCCTTGACAAGTGAAATGGTAAGGCTGG
          1 ATAGATACCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGCTGG

                  *                                                
       2454 ATAGATCCCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGC
          1 ATAGATACCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGC

       2509 AGAAATTGTT


Statistics
Matches: 49,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  58   49  1.00

ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Consensus pattern (58 bp):   
ATAGATACCTTGTTCCTTTCCAAAAGGCTAGCATTGACAAATGAAATGGTAAGGCTGG
Done.