Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03227.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3739
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:95 original size:2 final size:2

Alignment explanation


    Indices: 90--124  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

         80 AATTTTTTTA

                                                                 
         90 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

        125 GTCCTGTAGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.