Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03239.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4807
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33


Found at i:3721 original size:14 final size:14

Alignment explanation


    Indices: 3702--3740  Score: 60
    Period size: 14  Copynumber: 2.8  Consensus size: 14

       3692 GAAAAAGATG

                          
       3702 ATTCTATTGTTGAT
          1 ATTCTATTGTTGAT

                          
       3716 ATTCTATTGTTGAT
          1 ATTCTATTGTTGAT

            *    *     
       3730 TTTCTTTTGTT
          1 ATTCTATTGTT

       3741 TTAATTTAAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  14   23  1.00

ACGTcount: A:0.15, C:0.08, G:0.13, T:0.64


Consensus pattern (14 bp):   
ATTCTATTGTTGAT

Found at i:4313 original size:13 final size:13

Alignment explanation


    Indices: 4295--4320  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       4285 ATAAGAAGCA

                         
       4295 GAAGATCAAGCTG
          1 GAAGATCAAGCTG

                         
       4308 GAAGATCAAGCTG
          1 GAAGATCAAGCTG

       4321 TTGGAATATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15


Consensus pattern (13 bp):   
GAAGATCAAGCTG
Done.