Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03265.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4645
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:3508 original size:18 final size:18

Alignment explanation


    Indices: 3481--3529  Score: 80
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       3471 ATTGCTTTTC

                              
       3481 AGAAGCACTTTTGGGACA
          1 AGAAGCACTTTTGGGACA

                 *            
       3499 AGAAGTACTTTTGGGACA
          1 AGAAGCACTTTTGGGACA

             *           
       3517 AAAAGCACTTTTG
          1 AGAAGCACTTTTG

       3530 AGATAAAATG


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   28  1.00

ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27


Consensus pattern (18 bp):   
AGAAGCACTTTTGGGACA

Done.