Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03270.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3480
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31


Found at i:92 original size:5 final size:5

Alignment explanation


    Indices: 84--116  Score: 57
    Period size: 5  Copynumber: 6.6  Consensus size: 5

         74 CCTCTGCGAT

                                      *            
         84 AAAGA AAAGA AAAGA AAAGA AAGGA AAAGA AAA
          1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA

        117 TCCCAAGCAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00


Consensus pattern (5 bp):   
AAAGA

Found at i:936 original size:17 final size:15

Alignment explanation


    Indices: 897--932  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

        887 ATGTTCAAAA

                           
        897 TCTCTCCCCCCCCCC
          1 TCTCTCCCCCCCCCC

              *      *     
        912 TCCCTCCCCTCCCCC
          1 TCTCTCCCCCCCCCC

                  
        927 TCTCTC
          1 TCTCTC

        933 TCCCTCATTA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.00, C:0.75, G:0.00, T:0.25


Consensus pattern (15 bp):   
TCTCTCCCCCCCCCC
Done.