Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga01g00126.N2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690
Length: 1151
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Found at i:356 original size:135 final size:135
Alignment explanation
Indices: 114--380 Score: 507
Period size: 135 Copynumber: 2.0 Consensus size: 135
104 ATAACCTTTC
* *
114 ATCCGATGAAATGATATTCCAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT
1 ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT
179 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
66 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
244 GTTAT
131 GTTAT
*
249 ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACTGCGCCGGCCT
1 ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT
314 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
66 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
379 GT
131 GT
381 GACTTCCCGA
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 129 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (135 bp):
ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT
ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
GTTAT
Found at i:1076 original size:45 final size:45
Alignment explanation
Indices: 1012--1101 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
1002 GCATGTCTAT
1012 GAAAGAGACAAGTAAGTATAAGACACCCTAATTCTTTTTTTTAAG
1 GAAAGAGACAAGTAAGTATAAGACACCCTAATTCTTTTTTTTAAG
*
1057 GAAAGAGACAAGTAAGTATAAGACACCCTATTTCTTTTTTTTAAG
1 GAAAGAGACAAGTAAGTATAAGACACCCTAATTCTTTTTTTTAAG
1102 TTATTTTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (45 bp):
GAAAGAGACAAGTAAGTATAAGACACCCTAATTCTTTTTTTTAAG
Done.