Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03284.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 944

Length: 1574
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:1098 original size:31 final size:31

Alignment explanation


    Indices: 1027--1098  Score: 76
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       1017 ATTATTTGAC

                  *  *          *          
       1027 ACTTAAATTAGGTTTCAATATTGTATTTGGT
          1 ACTTAAGTTTGGTTTCAATAATGTATTTGGT

                *                           
       1058 ACTTTAGTTTGGTTTCAATAAT-TACTTTGGT
          1 ACTTAAGTTTGGTTTCAATAATGTA-TTTGGT

                       
       1089 A-TATAAGTTT
          1 ACT-TAAGTTT

       1099 TTCAATTTGA


Statistics
Matches: 34,  Mismatches: 5, Indels: 4
        0.79            0.12        0.09

Matches are distributed among these distances:
  30    3  0.09
  31   31  0.91

ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50


Consensus pattern (31 bp):   
ACTTAAGTTTGGTTTCAATAATGTATTTGGT
Done.