Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01242.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2216
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:477 original size:16 final size:17

Alignment explanation


    Indices: 456--489  Score: 61
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        446 AAAAAAAAAA

                             
        456 ACAAAAGAAT-AGACTG
          1 ACAAAAGAATAAGACTG

                             
        472 ACAAAAGAATAAGACTG
          1 ACAAAAGAATAAGACTG

             
        489 A
          1 A

        490 TGAACATCCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   10  0.59
  17    7  0.41

ACGTcount: A:0.59, C:0.12, G:0.18, T:0.12


Consensus pattern (17 bp):   
ACAAAAGAATAAGACTG

Done.