Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03298.F19

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3227
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:1076 original size:41 final size:40

Alignment explanation


    Indices: 1019--1098  Score: 142
    Period size: 41  Copynumber: 2.0  Consensus size: 40

       1009 TAGTTTGAGT

                                                     
       1019 AAGGGAACAGATTGCAAATGTTCAGATTTGGACCCGAACCC
          1 AAGGGAACAGATTGCAAATGTTCAGATTT-GACCCGAACCC

                                             *     
       1060 AAGGGAACAGATTGCAAATGTTCAGATTTGACCTGAACC
          1 AAGGGAACAGATTGCAAATGTTCAGATTTGACCCGAACC

       1099 TGAATCATTT


Statistics
Matches: 38,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  40    9  0.24
  41   29  0.76

ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21


Consensus pattern (40 bp):   
AAGGGAACAGATTGCAAATGTTCAGATTTGACCCGAACCC
Done.