Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00126.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1251
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Found at i:1202 original size:2 final size:2

Alignment explanation


    Indices: 1195--1235  Score: 64
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       1185 CCAGGTATTC

                                  *                             *        
       1195 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AA AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1236 ATACAATCAC


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44


Consensus pattern (2 bp):   
AT

Done.