Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03328.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 429

Length: 716
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32


Found at i:173 original size:18 final size:18

Alignment explanation


    Indices: 152--199  Score: 87
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        142 AAAATGTGAG

                             *
        152 AAATGATGTTCACATTTT
          1 AAATGATGTTCACATTTC

                              
        170 AAATGATGTTCACATTTC
          1 AAATGATGTTCACATTTC

                        
        188 AAATGATGTTCA
          1 AAATGATGTTCA

        200 AATTGATGGA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  18   29  1.00

ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40


Consensus pattern (18 bp):   
AAATGATGTTCACATTTC
Done.