Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03334.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3083
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:2560 original size:24 final size:24

Alignment explanation


    Indices: 2533--2627  Score: 111
    Period size: 24  Copynumber: 4.0  Consensus size: 24

       2523 AAGCAGATTC

                                *   
       2533 CTGGGCAGTCTCTTGGACTGCATG
          1 CTGGGCAGTCTCTTGGACTGAATG

                 *     *             
       2557 CTGGGTAGTCTGTTAGG-CTGAATG
          1 CTGGGCAGTCTCTT-GGACTGAATG

                       *    * *     
       2581 CTGGGCAGTCTGTTGGGCCGAATG
          1 CTGGGCAGTCTCTTGGACTGAATG

                              *    
       2605 CTGGGCAGTCTCTTGGACAGAAT
          1 CTGGGCAGTCTCTTGGACTGAAT

       2628 AATGGGCTGC


Statistics
Matches: 61,  Mismatches: 8, Indels: 4
        0.84            0.11        0.05

Matches are distributed among these distances:
  23    2  0.03
  24   57  0.93
  25    2  0.03

ACGTcount: A:0.16, C:0.20, G:0.36, T:0.28


Consensus pattern (24 bp):   
CTGGGCAGTCTCTTGGACTGAATG

Found at i:2633 original size:24 final size:24

Alignment explanation


    Indices: 2582--2634  Score: 61
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2572 GGCTGAATGC

                      *    * *    **
       2582 TGGGCAGTCTGTTGGGCCGAATGC
          1 TGGGCAGTCTCTTGGACAGAATAA

                                    
       2606 TGGGCAGTCTCTTGGACAGAATAA
          1 TGGGCAGTCTCTTGGACAGAATAA

                 
       2630 TGGGC
          1 TGGGC

       2635 TGCATAGTGA


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.19, C:0.19, G:0.38, T:0.25


Consensus pattern (24 bp):   
TGGGCAGTCTCTTGGACAGAATAA
Done.