Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03334.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3728
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:2316 original size:18 final size:18

Alignment explanation


    Indices: 2279--2317  Score: 60
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       2269 TGTAAGAAAA

                        *  *  
       2279 GGCCTAACACTTTTCCTT
          1 GGCCTAACACTTGTCATT

                              
       2297 GGCCTAACACTTGTCATT
          1 GGCCTAACACTTGTCATT

               
       2315 GGC
          1 GGC

       2318 GAAGTAGACT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33


Consensus pattern (18 bp):   
GGCCTAACACTTGTCATT
Done.