Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03338.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2908
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37


Found at i:1076 original size:40 final size:40

Alignment explanation


    Indices: 1015--1095  Score: 144
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1005 TTATGAAACA

                            *                       
       1015 ATCCCTCCTTTAGTTCTTCATGATCTTCTACGGATATCAT
          1 ATCCCTCCTTTAGTTCGTCATGATCTTCTACGGATATCAT

                       *                            
       1055 ATCCCTCCTTTTGTTCGTCATGATCTTCTACGGATATCAT
          1 ATCCCTCCTTTAGTTCGTCATGATCTTCTACGGATATCAT

             
       1095 A
          1 A

       1096 CTTCCACTCA


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.20, C:0.27, G:0.11, T:0.42


Consensus pattern (40 bp):   
ATCCCTCCTTTAGTTCGTCATGATCTTCTACGGATATCAT
Done.