Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03350.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 430

Length: 718
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.32


Found at i:544 original size:22 final size:23

Alignment explanation


    Indices: 505--556  Score: 65
    Period size: 22  Copynumber: 2.4  Consensus size: 23

        495 TCGTGATTTG

                         *    *    
        505 GTGATGTCTAGATTTTAGGTGTT
          1 GTGATGTCTAGATGTTAGATGTT

                                   
        528 GTGATGT-TAGATGTTAGATGTT
          1 GTGATGTCTAGATGTTAGATGTT

                     
        550 -T-ATGTCT
          1 GTGATGTCT

        557 TAAGTGGTTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 4
        0.81            0.06        0.12

Matches are distributed among these distances:
  20    4  0.15
  21    2  0.08
  22   13  0.50
  23    7  0.27

ACGTcount: A:0.19, C:0.04, G:0.29, T:0.48


Consensus pattern (23 bp):   
GTGATGTCTAGATGTTAGATGTT
Done.