Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03361.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2990
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31


Found at i:2453 original size:59 final size:59

Alignment explanation


    Indices: 2361--2478  Score: 236
    Period size: 59  Copynumber: 2.0  Consensus size: 59

       2351 ACGACATCTC

                                                                       
       2361 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
          1 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA

                                                                       
       2420 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
          1 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA

       2479 AGGATATTCG


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  59   59  1.00

ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46


Consensus pattern (59 bp):   
GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
Done.