Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03368.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5551
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32


Found at i:4408 original size:21 final size:21

Alignment explanation


    Indices: 4394--4451  Score: 98
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       4384 CCTACAACAT

                                 
       4394 GGCCATGTGTCCCTATGACAC
          1 GGCCATGTGTCCCTATGACAC

                  *              
       4415 GGCCATTTGTCCCTATGACAC
          1 GGCCATGTGTCCCTATGACAC

                     *      
       4436 GGCCATGTGCCCCTAT
          1 GGCCATGTGTCCCTAT

       4452 TTTTTCCAAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   34  1.00

ACGTcount: A:0.17, C:0.34, G:0.22, T:0.26


Consensus pattern (21 bp):   
GGCCATGTGTCCCTATGACAC
Done.