Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03382.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1833
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29


Found at i:299 original size:21 final size:21

Alignment explanation


    Indices: 273--314  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        263 CAACGCCAAT

                            *    
        273 CTTTGGAGATTGACATTAAAG
          1 CTTTGGAGATTGACATCAAAG

                                 
        294 CTTTGGAGATTGACATCAAAG
          1 CTTTGGAGATTGACATCAAAG

        315 AAATGATGCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31


Consensus pattern (21 bp):   
CTTTGGAGATTGACATCAAAG
Done.