Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03389.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5503
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35


Found at i:786 original size:128 final size:128

Alignment explanation


    Indices: 558--815  Score: 507
    Period size: 128  Copynumber: 2.0  Consensus size: 128

        548 GTAGTTTAGA

                                                                             
        558 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
          1 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA

                                                   *                       
        623 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATGGGATTGCCATGTAATAGTAGTCT
         66 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT

                                                                             
        686 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
          1 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA

                                                                           
        751 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT
         66 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT

              
        814 GT
          1 GT

        816 ACCCACTTCT


Statistics
Matches: 129,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 128  129  1.00

ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44


Consensus pattern (128 bp):   
GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT

Found at i:2146 original size:25 final size:25

Alignment explanation


    Indices: 2112--2161  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2102 TTCATATGCA

                                     
       2112 AGAAGAACATTATCAATAATTAATC
          1 AGAAGAACATTATCAATAATTAATC

                                     
       2137 AGAAGAACATTATCAATAATTAATC
          1 AGAAGAACATTATCAATAATTAATC

       2162 TACCTGGTAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28


Consensus pattern (25 bp):   
AGAAGAACATTATCAATAATTAATC
Done.