Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03396.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4474
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:3680 original size:230 final size:231

Alignment explanation


    Indices: 3001--3924  Score: 1793
    Period size: 230  Copynumber: 4.0  Consensus size: 231

       2991 AAGCTACCTA

                                                                             
       3001 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAA--GTGAATAGAAGTGGGAGGGTA
          1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA

                                                                             
       3064 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
         66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT

                                                                             
       3129 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
        131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT

                                                
       3194 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
        196 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG

                                                                             
       3230 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
          1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA

                                                                             
       3295 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
         66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT

                                                                             
       3360 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
        131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT

             *                                  
       3425 TTTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
        196 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG

                                                                             
       3461 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
          1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA

                                                                             
       3526 CTTGAAATAGATCTGACATATGCTCA-GGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
         66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT

                                                                             
       3590 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
        131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT

             *                                  
       3655 TTTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
        196 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG

                                                                             
       3691 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
          1 TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA

                                                                             
       3756 CTTGAAATAGATCTGACATATGCTCA-GGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
         66 CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT

                                                                             
       3820 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
        131 TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT

                             *                  
       3885 TGTTTCTGTATTTATGTTATAGCTTTCTCAAAATTG
        196 TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG

                
       3921 TTAT
          1 TTAT

       3925 ACCATTTCTC


Statistics
Matches: 690,  Mismatches: 3, Indels: 3
        0.99            0.00        0.00

Matches are distributed among these distances:
 229   42  0.06
 230  371  0.54
 231  277  0.40

ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35


Consensus pattern (231 bp):   
TTATCAGTAGTCCACCCTCCATACAAATATACAGAAAGGAAAGTGTGAATAGAAGTGGGAGGGTA
CTTGAAATAGATCTGACATATGCTCAGGGGGAAGGGGAAGCAGGAAGGAGTTTGATTTCTCCATT
TTGCTTTGGATTTAGCGATTGCTATTTTAATGTTTGAGCTCTTACACTTGACTCTGGATTGACTT
TGTTTCTGTATTTATGTCATAGCTTTCTCAAAATTG
Done.