Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00126.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1532
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27


Found at i:356 original size:135 final size:135

Alignment explanation


    Indices: 114--380  Score: 507
    Period size: 135  Copynumber: 2.0  Consensus size: 135

        104 ATAACCTTTC

                            *  *                                             
        114 ATCCGATGAAATGATATTCCAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT
          1 ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT

                                                                             
        179 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
         66 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG

                 
        244 GTTAT
        131 GTTAT

                                                                  *          
        249 ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACTGCGCCGGCCT
          1 ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT

                                                                             
        314 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
         66 ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG

              
        379 GT
        131 GT

        381 GACTTCCCGA


Statistics
Matches: 129,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 135  129  1.00

ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21


Consensus pattern (135 bp):   
ATCCGATGAAATGATAATCAAAATCGTGTGCCACCGTTGCCGGCAAAAGCTAACGGCGCCGGCCT
ATGCCGAGAAAATTACTTGCCCACACTGTGGCCAGGTCAATCCAATTATAAAGAAACCGTCGCCG
GTTAT

Found at i:1476 original size:2 final size:2

Alignment explanation


    Indices: 1469--1493  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1459 ACAAAGAGGT

                                                 
       1469 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       1494 GCCAATAGGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.