Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03397.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 797

Length: 1329
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25


Found at i:399 original size:22 final size:22

Alignment explanation


    Indices: 371--412  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        361 TGACGGGGAA

                    *             
        371 ATAAAAAGGAGAAGAAGAATCC
          1 ATAAAAAGCAGAAGAAGAATCC

                      *         
        393 ATAAAAAGCATAAGAAGAAT
          1 ATAAAAAGCAGAAGAAGAAT

        413 GCCCACTGTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.62, C:0.07, G:0.19, T:0.12


Consensus pattern (22 bp):   
ATAAAAAGCAGAAGAAGAATCC
Done.