Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03397.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2336
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1453 original size:22 final size:22

Alignment explanation


    Indices: 1425--1466  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1415 TGACGGGGAA

                    *             
       1425 ATAAAAAGGAGAAGAAGAATCC
          1 ATAAAAAGCAGAAGAAGAATCC

                      *         
       1447 ATAAAAAGCATAAGAAGAAT
          1 ATAAAAAGCAGAAGAAGAAT

       1467 GCCCACTGTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.62, C:0.07, G:0.19, T:0.12


Consensus pattern (22 bp):   
ATAAAAAGCAGAAGAAGAATCC
Done.