Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03405.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39


Found at i:489 original size:15 final size:15

Alignment explanation


    Indices: 469--498  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        459 AGTTTAAAGT

                      *    
        469 TTAAAATAATTGTAA
          1 TTAAAATAATAGTAA

                           
        484 TTAAAATAATAGTAA
          1 TTAAAATAATAGTAA

        499 AAATAACAAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37


Consensus pattern (15 bp):   
TTAAAATAATAGTAA
Done.