Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03417.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2522
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31


Found at i:593 original size:30 final size:30

Alignment explanation


    Indices: 559--616  Score: 100
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        549 CTCCACATGT

                                           
        559 TTCATAACA-TATTTTTCCATTATCATCACA
          1 TTCATAACATTA-TTTTCCATTATCATCACA

                                        
        589 TTCATAACATTATTTTCCATTATCATCA
          1 TTCATAACATTATTTTCCATTATCATCA

        617 GATTGTACCT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  30   25  0.93
  31    2  0.07

ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45


Consensus pattern (30 bp):   
TTCATAACATTATTTTCCATTATCATCACA
Done.