Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03429.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3310
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:1284 original size:15 final size:16

Alignment explanation


    Indices: 1258--1287  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1248 AAAATCAGAT

                            
       1258 AAAAATGCAAAAGAAA
          1 AAAAATGCAAAAGAAA

                           
       1274 AAAAATG-AAAAGAA
          1 AAAAATGCAAAAGAA

       1288 TGTGTTTTGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07


Consensus pattern (16 bp):   
AAAAATGCAAAAGAAA
Done.