Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03429.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4077
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1975 original size:15 final size:16

Alignment explanation


    Indices: 1949--1978  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1939 AAAATCAGAT

                            
       1949 AAAAATGCAAAAGAAA
          1 AAAAATGCAAAAGAAA

                           
       1965 AAAAATG-AAAAGAA
          1 AAAAATGCAAAAGAA

       1979 TGTGTTTTGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07


Consensus pattern (16 bp):   
AAAAATGCAAAAGAAA

Found at i:3854 original size:5 final size:6

Alignment explanation


    Indices: 3838--3863  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       3828 GAGAGGTAAG

                                          
       3838 CTTTTT CTTTTT CTTTTT CTTTTT CT
          1 CTTTTT CTTTTT CTTTTT CTTTTT CT

       3864 ATTTGGTTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (6 bp):   
CTTTTT

Done.