Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03429.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4073
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1971 original size:15 final size:16

Alignment explanation


    Indices: 1945--1974  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1935 AAAATCAGAT

                            
       1945 AAAAATGCAAAAGAAA
          1 AAAAATGCAAAAGAAA

                           
       1961 AAAAATG-AAAAGAA
          1 AAAAATGCAAAAGAA

       1975 TGTGTTTTGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07


Consensus pattern (16 bp):   
AAAAATGCAAAAGAAA

Found at i:3850 original size:5 final size:6

Alignment explanation


    Indices: 3834--3859  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       3824 GAGAGGTAAG

                                          
       3834 CTTTTT CTTTTT CTTTTT CTTTTT CT
          1 CTTTTT CTTTTT CTTTTT CTTTTT CT

       3860 ATTTGGTTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (6 bp):   
CTTTTT

Done.