Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03430.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2245
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29


Found at i:24 original size:6 final size:6

Alignment explanation


    Indices: 13--38  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

          3 CAAACCAAAT

                                          
         13 AGAAAA AGAAAA AGAAAA AGAAAA AG
          1 AGAAAA AGAAAA AGAAAA AGAAAA AG

         39 CTTACCTCTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Found at i:2139 original size:15 final size:16

Alignment explanation


    Indices: 2119--2148  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2109 ACAAAACACA

                            
       2119 TTCTTTT-CATTTTTT
          1 TTCTTTTGCATTTTTT

                           
       2134 TTCTTTTGCATTTTT
          1 TTCTTTTGCATTTTT

       2149 ATCTGATTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.07, C:0.13, G:0.03, T:0.77


Consensus pattern (16 bp):   
TTCTTTTGCATTTTTT

Done.