Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03433.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1694
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32


Found at i:63 original size:18 final size:18

Alignment explanation


    Indices: 37--71  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         27 AAAATTGACG

                *       *     
         37 CTTCTTCTTCCCTTTCCC
          1 CTTCCTCTTCCCCTTCCC

                             
         55 CTTCCTCTTCCCCTTCC
          1 CTTCCTCTTCCCCTTCC

         72 TCTTGGGTTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46


Consensus pattern (18 bp):   
CTTCCTCTTCCCCTTCCC

Found at i:65 original size:12 final size:12

Alignment explanation


    Indices: 50--75  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         40 CTTCTTCCCT

                        
         50 TTCCCCTTCCTC
          1 TTCCCCTTCCTC

                        
         62 TTCCCCTTCCTC
          1 TTCCCCTTCCTC

              
         74 TT
          1 TT

         76 GGGTTACAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46


Consensus pattern (12 bp):   
TTCCCCTTCCTC
Done.