Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03440.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4024
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:1484 original size:73 final size:73

Alignment explanation


    Indices: 1356--1500  Score: 211
    Period size: 73  Copynumber: 2.0  Consensus size: 73

       1346 TTTTACCTGA

                                                                    *        
       1356 CTTAACCAGTATGTTAGGTTGCAAGATCCTTTGGACATCAACATTTCAAAATCTATGAAGTCT-T
          1 CTTAACCAGTATGTTAGGTTGCAAGATCCTTTGGACATCAACATTTCAAAATCTATCAAGTCTCT

                     
       1420 CTTTATTTT
         66 -TTTATTTT

                    *             *          *            **  *              
       1429 CTTAACCATTATGTTAGGTTGCGAGATCCTTTGTACATCAACATTTTGAACTCTATCAAGTCTCT
          1 CTTAACCAGTATGTTAGGTTGCAAGATCCTTTGGACATCAACATTTCAAAATCTATCAAGTCTCT

                   
       1494 TTTATTT
         66 TTTATTT

       1501 ATCTATTGTT


Statistics
Matches: 64,  Mismatches: 7, Indels: 2
        0.88            0.10        0.03

Matches are distributed among these distances:
  73   63  0.98
  74    1  0.02

ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41


Consensus pattern (73 bp):   
CTTAACCAGTATGTTAGGTTGCAAGATCCTTTGGACATCAACATTTCAAAATCTATCAAGTCTCT
TTTATTTT
Done.