Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03451.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25


Found at i:176 original size:6 final size:6

Alignment explanation


    Indices: 161--193  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        151 GGTGATGCTT

                 *                                
        161 CCGCCG CCGCCA CCGCCA CCGCCA CCGCCA CCG
          1 CCGCCA CCGCCA CCGCCA CCGCCA CCGCCA CCG

        194 ACGAATCTTC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.12, C:0.67, G:0.21, T:0.00


Consensus pattern (6 bp):   
CCGCCA

Done.