Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03455.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2528
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32


Found at i:1071 original size:19 final size:19

Alignment explanation


    Indices: 1025--1063  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1015 GAATTTAGCT

                 *             
       1025 GACAAAGAGAGAGGACTAA
          1 GACAAGGAGAGAGGACTAA

                               
       1044 GACAAGGAGAGAGGACTAA
          1 GACAAGGAGAGAGGACTAA

             
       1063 G
          1 G

       1064 TAAGGGAGCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.49, C:0.10, G:0.36, T:0.05


Consensus pattern (19 bp):   
GACAAGGAGAGAGGACTAA
Done.