Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03457.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3062
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28


Found at i:27 original size:14 final size:14

Alignment explanation


    Indices: 8--34  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

          1 GAAGAAA

                          
          8 CAGCTAAGCAAAAC
          1 CAGCTAAGCAAAAC

                         
         22 CAGCTAAGCAAAA
          1 CAGCTAAGCAAAA

         35 GCTTTTCGCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.52, C:0.26, G:0.15, T:0.07


Consensus pattern (14 bp):   
CAGCTAAGCAAAAC

Found at i:1614 original size:3 final size:3

Alignment explanation


    Indices: 1608--1640  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

       1598 ACAACCACAA

                                                       
       1608 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG

       1641 TTCTTGCATG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00


Consensus pattern (3 bp):   
CAG

Done.