Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03457.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27


Found at i:354 original size:3 final size:3

Alignment explanation


    Indices: 348--380  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        338 ACAACCACAA

                                                       
        348 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG

        381 TTCTTGCATG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00


Consensus pattern (3 bp):   
CAG

Done.