Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01252.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 271
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35


Found at i:173 original size:14 final size:14

Alignment explanation


    Indices: 154--184  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        144 TTTGAATTAT

                          
        154 AATGCCACTAATCC
          1 AATGCCACTAATCC

                  *       
        168 AATGCCGCTAATCC
          1 AATGCCACTAATCC

               
        182 AAT
          1 AAT

        185 AGTTTAGATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.35, C:0.32, G:0.10, T:0.23


Consensus pattern (14 bp):   
AATGCCACTAATCC
Done.