Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01260.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 946
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32


Found at i:51 original size:35 final size:35

Alignment explanation


    Indices: 1--71  Score: 117
    Period size: 35  Copynumber: 2.0  Consensus size: 35

                                               
          1 CTCTCTAGTTCTTTTTATTTTCCTTCCATCTTCTT
          1 CTCTCTAGTTCTTTTTATTTTCCTTCCATCTTCTT

                                          *     
         36 CTCTCTA-TTCTTTTTTATTTTCCTTCCATTTTCTT
          1 CTCTCTAGTTC-TTTTTATTTTCCTTCCATCTTCTT

             
         71 C
          1 C

         72 AAGATCTTCA


Statistics
Matches: 34,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
  34    3  0.09
  35   31  0.91

ACGTcount: A:0.08, C:0.28, G:0.01, T:0.62


Consensus pattern (35 bp):   
CTCTCTAGTTCTTTTTATTTTCCTTCCATCTTCTT
Done.