Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03461.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3400
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30


Found at i:2068 original size:17 final size:17

Alignment explanation


    Indices: 2046--2081  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2036 CGCAGCTCAC

                             
       2046 CTTTTGTCTGGTCAACA
          1 CTTTTGTCTGGTCAACA

                             
       2063 CTTTTGTCTGGTCAACA
          1 CTTTTGTCTGGTCAACA

              
       2080 CT
          1 CT

       2082 GCAGACTCCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.17, C:0.25, G:0.17, T:0.42


Consensus pattern (17 bp):   
CTTTTGTCTGGTCAACA

Found at i:2881 original size:12 final size:12

Alignment explanation


    Indices: 2864--2888  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2854 GAGAAGAAAG

                        
       2864 CAGAGCCGGAGC
          1 CAGAGCCGGAGC

                        
       2876 CAGAGCCGGAGC
          1 CAGAGCCGGAGC

             
       2888 C
          1 C

       2889 GACATTTGAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.36, G:0.40, T:0.00


Consensus pattern (12 bp):   
CAGAGCCGGAGC
Done.