Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03465.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8513
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32


Found at i:2945 original size:19 final size:19

Alignment explanation


    Indices: 2899--2946  Score: 64
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       2889 GTATATATTT

                               
       2899 TAAA-TTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

                 *              
       2917 TAAATCTTATTT-GGATAGA
          1 TAAATTTTATTTAGG-TAGA

                       
       2936 TAAATTTTATT
          1 TAAATTTTATT

       2947 CATATTCTAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  18    6  0.23
  19   20  0.77

ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48


Consensus pattern (19 bp):   
TAAATTTTATTTAGGTAGA

Found at i:7627 original size:19 final size:19

Alignment explanation


    Indices: 7581--7628  Score: 55
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       7571 GTATATATTT

                               
       7581 TAAA-TTTATTTAGGTAGA
          1 TAAATTTTATTTAGGTAGA

                 *              
       7599 TAAATCTTATTT-GGATAGA
          1 TAAATTTTATTTAGG-TAGA

               *       
       7618 TAAGTTTTATT
          1 TAAATTTTATT

       7629 CATATTCTAG


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  18    6  0.24
  19   19  0.76

ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48


Consensus pattern (19 bp):   
TAAATTTTATTTAGGTAGA
Done.